References

Ashburner, Michael, Catherine A. Ball, Judith A. Blake, David Botstein, Heather Butler, J. Michael Cherry, Allan P. Davis, et al. 2000. “Gene Ontology: Tool for the Unification of Biology.” Nature Genetics 25 (1): 25–29. https://doi.org/10.1038/75556.

Bryan, Jennifer. 2021. Googlesheets4: Access Google Sheets Using the Sheets Api V4. https://CRAN.R-project.org/package=googlesheets4.

Corsello, Steven M, Joshua A Bittker, Zihan Liu, Joshua Gould, Patrick McCarren, Jodi E Hirschman, Stephen E Johnston, et al. 2017. “The Drug Repurposing Hub: A Next-Generation Drug Library and Information Resource.” Nature Medicine 23 (4): 405–8. https://doi.org/10.1038/nm.4306.

de Jonge, Edwin. 2019. Whisker: mustache for R, Logicless Templating. https://CRAN.R-project.org/package=whisker.

Dowle, Matt, and Arun Srinivasan. 2021. Data.table: Extension of ‘Data.frame‘. https://CRAN.R-project.org/package=data.table.

European Medicines Agency: EMA/Mb/69923/2010 - Annual Report of the European Medicines Agency 2009, (Sep 2022). 2022. https://www.ema.europa.eu/en/documents/annual-report/annual-report-european-medicines-agency-2009_en.pdf.

Gaulton, Anna, Anne Hersey, Michał Nowotka, A. Patrícia Bento, Jon Chambers, David Mendez, Prudence Mutowo, et al. 2016. “The ChEMBL database in 2017.” Nucleic Acids Research 45 (D1): D945–D954. https://doi.org/10.1093/nar/gkw1074.

Gillespie, Marc, Bijay Jassal, Ralf Stephan, Marija Milacic, Karen Rothfels, Andrea Senff-Ribeiro, Johannes Griss, et al. 2021. “The reactome pathway knowledgebase 2022.” Nucleic Acids Research 50 (D1): D687–D692. https://doi.org/10.1093/nar/gkab1028.

Hester, Jim, and Jennifer Bryan. 2022. Glue: Interpreted String Literals. https://CRAN.R-project.org/package=glue.

Kanehisa, M. 2002. “The KEGG Databases at GenomeNet.” Nucleic Acids Research 30 (1): 42–46. https://doi.org/10.1093/nar/30.1.42.

Kim, Sunghwan, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He, Siqian He, Qingliang Li, et al. 2020. “PubChem in 2021: new data content and improved web interfaces.” Nucleic Acids Research 49 (D1): D1388–D1395. https://doi.org/10.1093/nar/gkaa971.

Ooms, Jeroen. 2014. “The Jsonlite Package: A Practical and Consistent Mapping Between Json Data and R Objects.” arXiv:1403.2805 [stat.CO]. https://arxiv.org/abs/1403.2805.

“PubMed® [Internet]. Bethesda (Md): National Library of Medicine (Us), National Center for Biotechnology Information; 1996 - Cited 2022 Aug 30.” 2022. https://www.ncbi.nlm.nih.gov/pubmed.

Safran, Marilyn, Naomi Rosen, Michal Twik, Ruth BarShir, Tsippi Iny Stein, Dvir Dahary, Simon Fishilevich, and Doron Lancet. 2021. “The Genecards Suite.” In Practical Guide to Life Science Databases, edited by Imad Abugessaisa and Takeya Kasukawa, 27–56. Singapore: Springer Nature Singapore. https://doi.org/10.1007/978-981-16-5812-9_2.

Sayers, Eric W, Jeffrey Beck, Evan E Bolton, Devon Bourexis, James R Brister, Kathi Canese, Donald C Comeau, et al. 2020. “Database resources of the National Center for Biotechnology Information.” Nucleic Acids Research 49 (D1): D10–D17. https://doi.org/10.1093/nar/gkaa892.

Szklarczyk, Damian, Annika L Gable, Katerina C Nastou, David Lyon, Rebecca Kirsch, Sampo Pyysalo, Nadezhda T Doncheva, et al. 2021. “The STRING Database in 2021: Customizable Protein–Protein Networks, and Functional Characterization of User-Uploaded Gene/Measurement Sets.” Nucleic Acids Research 49 (D1): D605–D612. https://doi.org/10.1093/nar/gkaa1074.

The Gene Ontology Consortium, Seth Carbon, Eric Douglass, Benjamin M Good, Deepak R Unni, Nomi L Harris, Christopher J Mungall, et al. 2021. “The Gene Ontology Resource: Enriching a GOld Mine.” Nucleic Acids Research 49 (D1): D325–D334. https://doi.org/10.1093/nar/gkaa1113.

“UniProt: the universal protein knowledgebase in 2021.” 2020. Nucleic Acids Research 49 (D1): D480–D489. https://doi.org/10.1093/nar/gkaa1100.

Wickham, Hadley. 2019a. Assertthat: Easy Pre and Post Assertions. https://CRAN.R-project.org/package=assertthat.

———. 2019b. Stringr: Simple, Consistent Wrappers for Common String Operations. https://CRAN.R-project.org/package=stringr.

———. 2020. Httr: Tools for Working with Urls and Http. https://CRAN.R-project.org/package=httr.

———. 2021. Rvest: Easily Harvest (Scrape) Web Pages. https://CRAN.R-project.org/package=rvest.

Wickham, Hadley, Romain François, Lionel Henry, and Kirill Müller. 2021. Dplyr: A Grammar of Data Manipulation. https://CRAN.R-project.org/package=dplyr.

Wickham, Hadley, Jim Hester, and Jennifer Bryan. 2022. Readr: Read Rectangular Text Data. https://CRAN.R-project.org/package=readr.

Wickham, Hadley, Jim Hester, and Jeroen Ooms. 2021. Xml2: Parse Xml. https://CRAN.R-project.org/package=xml2.