Chapter 3 Running on self-managed computer

Scripts of three stages can run on a local computer, if steps of installation have been performed on it. These stages, their functionalities and input/output files are described in Chapter 4 and 5.

Steps of executing each stage script

• Open a terminal window on your computer
• Enter into the location of the installation directory. For example cd C:\EZCancerTarget.
• Run clue stage by Rscript -e "source('R/clue.R'); main()"
• Run dataPatch stage by Rscript -e "source('R/dataPatch.R'); main()"
• Run report generation by Rscript -e "source('R/renderWebPage.R'); main()"